usefragsph not on There are 24 ligand heavy atoms Ligand center of coords (x y z): 33.1705 12.6066666666667 2.08654166666667 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1455 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 907 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 907 Number of spheres polar: 231, nonpolar: 607, out of current total: 907 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 23.20926 43.15565 2.61285 22.50509 -7.50977 12.05351 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 263 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 213 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 124 Spheres center of coords (x y z): 34.1029007258064 9.29290524193548 3.43130838709677 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.18549210175107 Final number of output spheres is: 45 Number of polar spheres: 15 Number of nonpolar spheres: 27 Number of spheres that are near neither polar nor nonpolar receptor atoms: 3 Final number of spheres that are from crystallographic ligand: 24