usefragsph not on
There are 23 ligand heavy atoms
Ligand center of coords (x y z): -5.30939130434783 35.554652173913 -1.93791304347826
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 1277
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 703
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 703
Number of spheres polar: 123, nonpolar: 490, out of current total: 703
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -15.27389 4.63866 25.90781 45.45850 -11.89126 7.71493
Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 361
Number of spheres after second pass removing spheres absolutely <0.5 from each other: 313
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 204
Spheres center of coords (x y z): -9.03119318627451 33.4007173039216 -3.91577151960784
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 5.46332295139422
Final number of output spheres is: 60
Number of polar spheres: 12
Number of nonpolar spheres: 45
Number of spheres that are near neither polar nor nonpolar receptor atoms: 3
Final number of spheres that are from crystallographic ligand: 23