usefragsph not on There are 24 ligand heavy atoms Ligand center of coords (x y z): 33.295875 -12.4855 -22.5707083333333 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1522 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 895 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 895 Number of spheres polar: 222, nonpolar: 594, out of current total: 895 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 23.30735 43.28700 -22.24177 -2.49729 -32.53898 -12.90611 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 436 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 351 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 187 Spheres center of coords (x y z): 33.3531012299465 -9.93921721925133 -24.3955850802139 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 4.30356209167692 Final number of output spheres is: 60 Number of polar spheres: 11 Number of nonpolar spheres: 47 Number of spheres that are near neither polar nor nonpolar receptor atoms: 2 Final number of spheres that are from crystallographic ligand: 24