usefragsph not on There are 26 ligand heavy atoms Ligand center of coords (x y z): 77.3817692307692 47.7405 138.119577307692 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1938 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 1067 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 1067 Number of spheres polar: 233, nonpolar: 739, out of current total: 1067 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 67.38400 87.32465 37.76537 57.71648 128.14928 148.09924 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 511 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 438 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 312 Spheres center of coords (x y z): 79.4090549679487 46.3421684615385 141.204162596154 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.57945334568128 Final number of output spheres is: 60 Number of polar spheres: 21 Number of nonpolar spheres: 39 Number of spheres that are near neither polar nor nonpolar receptor atoms: 0 Final number of spheres that are from crystallographic ligand: 26