Distance from surface specified: 1.80 There are 27 ligand heavy atoms Ligand center of coords (x y z): 50.8265555555556 43.2287037037037 -2.52403703703704 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 15790 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (14 angstroms): 13588 WARNING: removing a crystallographic sphere that is distance 1.38503068558065 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 1.61643620350449 angstroms from closest receptor atom Number of spheres after removing too far (>7 angstroms) and too close to receptor (<2 angstroms): 13078 Number of spheres polar: 6117, nonpolar: 5834, out of current total: 13078 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 37.20920 64.82460 29.23300 57.22660 -16.50900 11.43900 Number of spheres after removing spheres too close to each other (approximately <1.4 angstroms): 1656 Number of spheres after second pass removing spheres absolutely <0.9 from each other: 946 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 928 Spheres center of coords (x y z): 55.3916467672413 44.5759103448276 -4.55503749999999 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 13.1006140065933 Final number of output spheres is: 200 Number of polar spheres: 100 Number of nonpolar spheres: 98 Number of spheres that are near neither polar nor nonpolar receptor atoms: 2 Final number of spheres that are from crystallographic ligand: 25