usefragsph not on There are 45 ligand heavy atoms Ligand center of coords (x y z): 37.1720222222222 60.7600444444444 44.8506666666666 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 2530 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 1211 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 1211 Number of spheres polar: 347, nonpolar: 609, out of current total: 1211 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 27.20785 47.14079 50.78881 70.49928 34.85189 54.71083 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 392 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 327 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 322 Spheres center of coords (x y z): 38.7457957763975 59.5111462732919 43.594980621118 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.73824709302535 Final number of output spheres is: 45 Number of polar spheres: 7 Number of nonpolar spheres: 33 Number of spheres that are near neither polar nor nonpolar receptor atoms: 5 Final number of spheres that are from crystallographic ligand: 45