usefragsph not on There are 36 ligand heavy atoms Ligand center of coords (x y z): 35.6008611111111 60.0206388888889 43.7499444444444 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 2050 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 1174 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 1174 Number of spheres polar: 325, nonpolar: 600, out of current total: 1174 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 25.65252 45.59653 50.03629 67.13700 33.76826 53.74598 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 365 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 307 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 303 Spheres center of coords (x y z): 37.6592574257426 59.0845959735974 42.0365397359736 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.28598836310317 Final number of output spheres is: 45 Number of polar spheres: 15 Number of nonpolar spheres: 29 Number of spheres that are near neither polar nor nonpolar receptor atoms: 1 Final number of spheres that are from crystallographic ligand: 36