usefragsph not on There are 51 ligand heavy atoms Ligand center of coords (x y z): 10.578862745098 13.8061568627451 66.1860196078431 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 2527 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 1192 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 1191 Number of spheres polar: 359, nonpolar: 564, out of current total: 1191 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 1.51358 20.49483 3.85825 23.78920 56.20756 76.10471 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 672 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 575 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 569 Spheres center of coords (x y z): 10.8087217574692 12.5219071353251 64.7224030052724 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.16357947109857 Final number of output spheres is: 60 Number of polar spheres: 16 Number of nonpolar spheres: 37 Number of spheres that are near neither polar nor nonpolar receptor atoms: 7 Final number of spheres that are from crystallographic ligand: 51