usefragsph not on There are 29 ligand heavy atoms Ligand center of coords (x y z): 23.7591724137931 70.7508965517241 82.1533448275862 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1885 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 1076 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 1076 Number of spheres polar: 329, nonpolar: 518, out of current total: 1076 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 13.81924 32.59836 60.77922 80.73534 72.19716 92.10263 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 585 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 508 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 489 Spheres center of coords (x y z): 23.6813915541922 68.2329980163599 80.2425149079754 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.45733610503308 Final number of output spheres is: 60 Number of polar spheres: 34 Number of nonpolar spheres: 15 Number of spheres that are near neither polar nor nonpolar receptor atoms: 11 Final number of spheres that are from crystallographic ligand: 29