usefragsph not on There are 28 ligand heavy atoms Ligand center of coords (x y z): 10.9253928571429 94.11575 141.088427142857 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1598 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 966 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 966 Number of spheres polar: 294, nonpolar: 527, out of current total: 966 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 0.96929 20.90651 84.13384 102.89388 131.09276 151.07484 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 295 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 230 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 214 Spheres center of coords (x y z): 9.50940663551402 94.8441641588785 139.43314088785 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.07217036455112 Final number of output spheres is: 45 Number of polar spheres: 19 Number of nonpolar spheres: 22 Number of spheres that are near neither polar nor nonpolar receptor atoms: 4 Final number of spheres that are from crystallographic ligand: 28