usefragsph not on There are 34 ligand heavy atoms Ligand center of coords (x y z): 82.1546176470588 23.3950588235294 69.6121764705882 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1967 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 1213 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 1213 Number of spheres polar: 311, nonpolar: 686, out of current total: 1213 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 72.20220 92.11948 13.40188 31.98715 59.62301 79.60273 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 623 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 545 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 514 Spheres center of coords (x y z): 80.2062207976654 23.7633018871595 67.5787650972762 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.80436375117682 Final number of output spheres is: 60 Number of polar spheres: 32 Number of nonpolar spheres: 26 Number of spheres that are near neither polar nor nonpolar receptor atoms: 2 Final number of spheres that are from crystallographic ligand: 34