usefragsph not on
There are 48 ligand heavy atoms
Ligand center of coords (x y z): 10.5789166666667 44.2804375 104.373583333333
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 2602
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 1228
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 1228
Number of spheres polar: 301, nonpolar: 623, out of current total: 1228
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 0.74473 20.48468 34.29096 54.24957 94.37643 114.34785
Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 685
Number of spheres after second pass removing spheres absolutely <0.5 from each other: 611
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 592
Spheres center of coords (x y z): 11.7242504560811 42.5764244594595 102.932094712838
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 5.60878201800297
Final number of output spheres is: 60
Number of polar spheres: 23
Number of nonpolar spheres: 34
Number of spheres that are near neither polar nor nonpolar receptor atoms: 3
Final number of spheres that are from crystallographic ligand: 48