usefragsph not on
There are 42 ligand heavy atoms
Ligand center of coords (x y z): 19.1823571428571 41.4978333333333 127.729952142857
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 2519
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 1432
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 1432
Number of spheres polar: 346, nonpolar: 720, out of current total: 1432
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 9.18684 29.14116 31.49978 51.48608 117.73895 137.71877
Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 443
Number of spheres after second pass removing spheres absolutely <0.8 from each other: 366
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 329
Spheres center of coords (x y z): 20.555077325228 37.6453075379939 128.835386443769
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 5.97602083109402
Final number of output spheres is: 45
Number of polar spheres: 11
Number of nonpolar spheres: 28
Number of spheres that are near neither polar nor nonpolar receptor atoms: 6
Final number of spheres that are from crystallographic ligand: 42