usefragsph not on There are 43 ligand heavy atoms Ligand center of coords (x y z): 27.1091860465116 111.127697674419 127.057255116279 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 2222 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 1124 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 1124 Number of spheres polar: 325, nonpolar: 606, out of current total: 1124 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 17.26700 37.10891 101.13300 120.86700 117.49349 137.00739 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 360 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 293 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 278 Spheres center of coords (x y z): 28.5599845323741 108.940875179856 128.217899172662 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.31251312773095 Final number of output spheres is: 45 Number of polar spheres: 17 Number of nonpolar spheres: 25 Number of spheres that are near neither polar nor nonpolar receptor atoms: 3 Final number of spheres that are from crystallographic ligand: 43