usefragsph not on There are 26 ligand heavy atoms Ligand center of coords (x y z): -12.7988846153846 25.2178846153846 -36.6241538461538 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1732 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 1238 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 1238 Number of spheres polar: 307, nonpolar: 698, out of current total: 1238 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -22.75983 -3.36553 15.24773 35.20505 -46.61205 -26.69523 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 663 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 574 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 561 Spheres center of coords (x y z): -12.2851987878788 26.5072786452763 -38.9301213547237 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.53119569695155 Final number of output spheres is: 60 Number of polar spheres: 24 Number of nonpolar spheres: 30 Number of spheres that are near neither polar nor nonpolar receptor atoms: 6 Final number of spheres that are from crystallographic ligand: 26