usefragsph not on There are 44 ligand heavy atoms Ligand center of coords (x y z): -24.5677045454545 -2.24763636363636 -10.4826363636364 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 2174 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 1179 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 1179 Number of spheres polar: 301, nonpolar: 606, out of current total: 1179 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -34.48066 -14.56916 -12.24692 7.70382 -20.47834 -0.52010 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 384 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 328 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 319 Spheres center of coords (x y z): -23.5485421630094 -4.75346 -9.48287965517241 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.87146595782991 Final number of output spheres is: 45 Number of polar spheres: 11 Number of nonpolar spheres: 30 Number of spheres that are near neither polar nor nonpolar receptor atoms: 4 Final number of spheres that are from crystallographic ligand: 44