usefragsph not on There are 34 ligand heavy atoms Ligand center of coords (x y z): 8.92888235294118 47.6868823529412 70.1158529411765 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 2087 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 979 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 979 Number of spheres polar: 350, nonpolar: 477, out of current total: 979 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -1.07109 18.86001 37.74495 57.59320 61.24973 80.08717 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 527 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 443 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 410 Spheres center of coords (x y z): 7.79625548780487 47.3730721707317 72.1812594146341 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 4.96382542892968 Final number of output spheres is: 60 Number of polar spheres: 31 Number of nonpolar spheres: 27 Number of spheres that are near neither polar nor nonpolar receptor atoms: 2 Final number of spheres that are from crystallographic ligand: 34