usefragsph not on There are 35 ligand heavy atoms Ligand center of coords (x y z): 8.80228571428572 47.5824285714286 69.7250571428571 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 2016 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 881 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 881 Number of spheres polar: 284, nonpolar: 469, out of current total: 881 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -1.18605 18.72810 39.91123 57.39243 61.89610 79.70590 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 303 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 229 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 215 Spheres center of coords (x y z): 7.97209534883722 47.5597389767442 72.235483627907 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 4.92613240758023 Final number of output spheres is: 45 Number of polar spheres: 16 Number of nonpolar spheres: 27 Number of spheres that are near neither polar nor nonpolar receptor atoms: 2 Final number of spheres that are from crystallographic ligand: 35