usefragsph not on There are 33 ligand heavy atoms Ligand center of coords (x y z): 82.8466060606061 18.360696969697 -37.6239696969697 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 2038 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 958 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 951 Number of spheres polar: 343, nonpolar: 457, out of current total: 951 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 72.91637 92.63050 8.36676 28.21354 -47.61813 -27.62747 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 518 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 428 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 389 Spheres center of coords (x y z): 83.7703894601543 16.2220750128535 -37.376790025707 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 4.99462604213332 Final number of output spheres is: 60 Number of polar spheres: 26 Number of nonpolar spheres: 30 Number of spheres that are near neither polar nor nonpolar receptor atoms: 4 Final number of spheres that are from crystallographic ligand: 33