usefragsph not on There are 35 ligand heavy atoms Ligand center of coords (x y z): 8.89917142857143 47.3199142857143 70.1015428571429 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 2030 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 923 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 923 Number of spheres polar: 299, nonpolar: 463, out of current total: 923 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -1.09004 18.89171 37.32777 57.19423 60.12629 80.09959 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 478 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 417 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 394 Spheres center of coords (x y z): 7.61701670050761 47.4067024365482 71.9977276395939 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.1121851822749 Final number of output spheres is: 60 Number of polar spheres: 28 Number of nonpolar spheres: 24 Number of spheres that are near neither polar nor nonpolar receptor atoms: 8 Final number of spheres that are from crystallographic ligand: 35