usefragsph not on
There are 44 ligand heavy atoms
Ligand center of coords (x y z): -3.44031818181818 4.72945454545455 -5.89722727272727
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 2328
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 1169
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 1169
Number of spheres polar: 326, nonpolar: 595, out of current total: 1169
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -13.43489 6.55555 -5.25378 12.36647 -15.55817 4.08004
Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 644
Number of spheres after second pass removing spheres absolutely <0.5 from each other: 565
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 556
Spheres center of coords (x y z): -3.13168501798561 2.06646787769784 -4.74753543165467
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 5.93002456756464
Final number of output spheres is: 60
Number of polar spheres: 28
Number of nonpolar spheres: 28
Number of spheres that are near neither polar nor nonpolar receptor atoms: 4
Final number of spheres that are from crystallographic ligand: 44