usefragsph not on
There are 43 ligand heavy atoms
Ligand center of coords (x y z): 3.82618604651163 6.18702325581395 1.45023255813953
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 2326
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 1217
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 1217
Number of spheres polar: 321, nonpolar: 620, out of current total: 1217
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -6.12997 13.82602 -3.73770 16.13118 -8.51777 11.42804
Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 641
Number of spheres after second pass removing spheres absolutely <0.5 from each other: 527
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 495
Spheres center of coords (x y z): 4.75933686868687 3.49793945454545 3.59140204040404
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 5.29259821764618
Final number of output spheres is: 60
Number of polar spheres: 17
Number of nonpolar spheres: 32
Number of spheres that are near neither polar nor nonpolar receptor atoms: 11
Final number of spheres that are from crystallographic ligand: 43