usefragsph not on
There are 38 ligand heavy atoms
Ligand center of coords (x y z): 3.82723684210526 6.22681578947369 1.46131578947368
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 2031
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 995
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 995
Number of spheres polar: 215, nonpolar: 507, out of current total: 995
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -6.08768 13.82219 -3.68971 16.19325 -8.09287 10.87659
Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 313
Number of spheres after second pass removing spheres absolutely <0.8 from each other: 266
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 257
Spheres center of coords (x y z): 4.62534607003891 3.24932124513619 3.68239910505836
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 5.70941367267451
Final number of output spheres is: 45
Number of polar spheres: 10
Number of nonpolar spheres: 29
Number of spheres that are near neither polar nor nonpolar receptor atoms: 6
Final number of spheres that are from crystallographic ligand: 38