usefragsph not on There are 34 ligand heavy atoms Ligand center of coords (x y z): -9.92388235294118 -24.0459117647059 -0.468441176470588 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 2158 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 1122 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 1122 Number of spheres polar: 352, nonpolar: 591, out of current total: 1122 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -19.91156 0.04118 -31.26417 -14.11343 -10.43996 9.51239 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 353 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 286 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 270 Spheres center of coords (x y z): -8.65840344444445 -23.3785306666667 -2.65023337037037 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.58130323932009 Final number of output spheres is: 45 Number of polar spheres: 16 Number of nonpolar spheres: 27 Number of spheres that are near neither polar nor nonpolar receptor atoms: 2 Final number of spheres that are from crystallographic ligand: 34