usefragsph not on There are 30 ligand heavy atoms Ligand center of coords (x y z): -9.1869 -23.5682666666667 -0.1377 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1971 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 961 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 961 Number of spheres polar: 310, nonpolar: 441, out of current total: 961 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -19.18173 0.76161 -31.34183 -13.57774 -10.12402 9.80913 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 536 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 458 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 424 Spheres center of coords (x y z): -8.10407726415094 -23.0214238679245 -2.04013327830189 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.12907988396937 Final number of output spheres is: 60 Number of polar spheres: 23 Number of nonpolar spheres: 34 Number of spheres that are near neither polar nor nonpolar receptor atoms: 3 Final number of spheres that are from crystallographic ligand: 30