usefragsph not on
There are 43 ligand heavy atoms
Ligand center of coords (x y z): -7.78109302325581 -15.0413720930233 -9.7453488372093
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 2274
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 1145
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 1145
Number of spheres polar: 235, nonpolar: 642, out of current total: 1145
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -17.66913 2.21265 -25.04099 -5.11811 -19.73681 0.07554
Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 638
Number of spheres after second pass removing spheres absolutely <0.5 from each other: 541
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 530
Spheres center of coords (x y z): -5.14262456603773 -17.3392370377359 -9.40722298113208
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 5.54160573620087
Final number of output spheres is: 60
Number of polar spheres: 11
Number of nonpolar spheres: 36
Number of spheres that are near neither polar nor nonpolar receptor atoms: 13
Final number of spheres that are from crystallographic ligand: 43