Distance from surface specified: 1.80 There are 43 ligand heavy atoms Ligand center of coords (x y z): -7.78109302325581 -15.0413720930233 -9.7453488372093 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 19568 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (14 angstroms): 14599 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<2 angstroms): 13923 Number of spheres polar: 7440, nonpolar: 5379, out of current total: 13923 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -21.77900 6.21760 -29.03460 -1.04480 -23.74060 4.25400 Number of spheres after removing spheres too close to each other (approximately <1.4 angstroms): 1996 Number of spheres after second pass removing spheres absolutely <0.9 from each other: 909 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 849 Spheres center of coords (x y z): -5.92512179034157 -18.3460454652533 -5.57679104829211 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 10.637200928992 Final number of output spheres is: 200 Number of polar spheres: 84 Number of nonpolar spheres: 100 Number of spheres that are near neither polar nor nonpolar receptor atoms: 16 Final number of spheres that are from crystallographic ligand: 43