There are 43 ligand heavy atoms Ligand center of coords (x y z): -7.78109302325581 -15.0413720930233 -9.7453488372093 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 19568 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (12 angstroms): 10771 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 10771 Number of spheres polar: 5630, nonpolar: 4234, out of current total: 10771 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -19.77180 4.20540 -27.03620 -3.04340 -20.56940 2.24680 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 1349 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 667 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 654 Spheres center of coords (x y z): -4.56944281345567 -17.6492544342508 -6.90815535168196 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 8.78750010382158 Final number of output spheres is: 120 Number of polar spheres: 56 Number of nonpolar spheres: 58 Number of spheres that are near neither polar nor nonpolar receptor atoms: 6 Final number of spheres that are from crystallographic ligand: 43