Distance from surface specified: 1.80 There are 18 ligand heavy atoms Ligand center of coords (x y z): 51.8371666666667 101.549777777778 29.635 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 12006 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (14 angstroms): 9916 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<2 angstroms): 9590 Number of spheres polar: 6134, nonpolar: 2856, out of current total: 9590 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 37.83740 65.82860 87.55300 115.48340 15.63580 43.63200 Number of spheres after removing spheres too close to each other (approximately <1.4 angstroms): 1195 Number of spheres after second pass removing spheres absolutely <0.9 from each other: 624 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 532 Spheres center of coords (x y z): 53.7752421052632 100.883058646617 35.9832496240602 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 10.7900629393205 Final number of output spheres is: 200 Number of polar spheres: 124 Number of nonpolar spheres: 65 Number of spheres that are near neither polar nor nonpolar receptor atoms: 11 Final number of spheres that are from crystallographic ligand: 18