usefragsph not on There are 22 ligand heavy atoms Ligand center of coords (x y z): 52.0955909090909 102.419181818182 29.5266818181818 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1269 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 689 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 689 Number of spheres polar: 248, nonpolar: 249, out of current total: 689 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 42.10753 62.08892 92.47483 112.35506 19.57717 39.52216 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 382 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 327 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 299 Spheres center of coords (x y z): 54.7476594983278 102.330171839465 33.4695098996655 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.30518901830907 Final number of output spheres is: 60 Number of polar spheres: 13 Number of nonpolar spheres: 33 Number of spheres that are near neither polar nor nonpolar receptor atoms: 14 Final number of spheres that are from crystallographic ligand: 22