usefragsph not on There are 27 ligand heavy atoms Ligand center of coords (x y z): -69.6188148148148 -0.224111111111111 42.9797037037037 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1413 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 929 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 929 Number of spheres polar: 300, nonpolar: 405, out of current total: 929 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -79.60886 -59.63034 -10.20672 9.77213 33.10920 52.88143 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 473 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 385 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 334 Spheres center of coords (x y z): -68.991070479042 2.68327592814371 45.277207994012 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.57576635432616 Final number of output spheres is: 60 Number of polar spheres: 10 Number of nonpolar spheres: 36 Number of spheres that are near neither polar nor nonpolar receptor atoms: 14 Final number of spheres that are from crystallographic ligand: 27