usefragsph not on There are 22 ligand heavy atoms Ligand center of coords (x y z): 15.7245 28.0297727272727 47.6116363636364 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1935 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 761 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 761 Number of spheres polar: 188, nonpolar: 496, out of current total: 761 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 5.75977 25.70924 18.10953 37.94910 37.63994 57.60157 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 220 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 173 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 87 Spheres center of coords (x y z): 15.1049287356322 28.2757495402299 48.0607244827586 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 2.32025562233637 Final number of output spheres is: 45 Number of polar spheres: 8 Number of nonpolar spheres: 37 Number of spheres that are near neither polar nor nonpolar receptor atoms: 0 Final number of spheres that are from crystallographic ligand: 22