usefragsph not on There are 22 ligand heavy atoms Ligand center of coords (x y z): 15.7245 28.0297727272727 47.6116363636364 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1935 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 761 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 761 Number of spheres polar: 188, nonpolar: 496, out of current total: 761 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 5.75977 25.70924 18.10953 37.94910 37.63994 57.60157 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 382 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 297 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 154 Spheres center of coords (x y z): 15.2698533766234 28.2980042857143 47.6277247402597 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 2.32435855018552 Final number of output spheres is: 60 Number of polar spheres: 7 Number of nonpolar spheres: 51 Number of spheres that are near neither polar nor nonpolar receptor atoms: 2 Final number of spheres that are from crystallographic ligand: 22