usefragsph not on There are 22 ligand heavy atoms Ligand center of coords (x y z): -4.4195 21.8622727272727 33.0379090909091 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 2655 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 1511 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 1502 Number of spheres polar: 298, nonpolar: 928, out of current total: 1502 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -14.37800 5.57383 12.01511 31.82630 23.10502 43.03159 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 450 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 380 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 357 Spheres center of coords (x y z): -4.57085731092437 24.1359791036415 33.6018970588236 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 7.85934662110338 Final number of output spheres is: 45 Number of polar spheres: 7 Number of nonpolar spheres: 33 Number of spheres that are near neither polar nor nonpolar receptor atoms: 5 Final number of spheres that are from crystallographic ligand: 22