usefragsph not on There are 38 ligand heavy atoms Ligand center of coords (x y z): 11.1705 19.0643157894737 9.8998947368421 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 2367 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 964 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 964 Number of spheres polar: 187, nonpolar: 713, out of current total: 964 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 1.20065 21.11445 9.09244 29.06009 -0.08972 19.88817 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 263 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 202 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 170 Spheres center of coords (x y z): 11.1725878823529 21.0355654705882 7.49712070588235 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 4.34073235759328 Final number of output spheres is: 45 Number of polar spheres: 10 Number of nonpolar spheres: 34 Number of spheres that are near neither polar nor nonpolar receptor atoms: 1 Final number of spheres that are from crystallographic ligand: 38