Running Epik version 2.1209 Epik. Copyright Schrodinger, LLC. All rights reserved. Input file name: A.mae Output file name: B.mae Structure adjustment calculation requested. Target pH set to 7.000 pHt tolerance set to 1.000000e+00 Epik minmium tautomer probability set to 2.000000e-01 Adjusting structures for pH 7.000000e+00 and minimum probability 1.000000e-01 Solvent model name: water Using Incremental parameter file version: 1.0004 Jobcontrol is not being used for this specific Epik calculation. --------------------------- Processing Input Structure #1 Title: TEMP00000001 Calculated pKas Conjugate Atom Acid/Base pKa . . . . . . . . . . . . . . . . . . . . . . . Variation: 1 24 Conj_Base 4.97 pKa penalty: 0.01 kcal/mol Charging penalty: 0.01 kcal/mol Neutralization penalty: 0.00 kcal/mol Overall Penalty (tautomerization included): -0.00 kcal/mol Total Charge: -1 --------------------------- Processing Input Structure #2 Title: TEMP00000002 Calculated pKas Conjugate Atom Acid/Base pKa . . . . . . . . . . . . . . . . . . . . . . . Variation: 1 24 Conj_Base 4.97 pKa penalty: 0.01 kcal/mol Charging penalty: 0.01 kcal/mol Neutralization penalty: 0.00 kcal/mol Overall Penalty (tautomerization included): -0.00 kcal/mol Total Charge: -1 --------------------------- Processing Input Structure #3 Title: TEMP00000003 Calculated pKas Conjugate Atom Acid/Base pKa . . . . . . . . . . . . . . . . . . . . . . . Variation: 1 24 Conj_Base 4.97 pKa penalty: 0.01 kcal/mol Charging penalty: 0.01 kcal/mol Neutralization penalty: 0.00 kcal/mol Overall Penalty (tautomerization included): -0.00 kcal/mol Total Charge: -1 --------------------------- Processing Input Structure #4 Title: TEMP00000004 Calculated pKas Conjugate Atom Acid/Base pKa . . . . . . . . . . . . . . . . . . . . . . . Variation: 1 24 Conj_Base 4.97 pKa penalty: 0.01 kcal/mol Charging penalty: 0.01 kcal/mol Neutralization penalty: 0.00 kcal/mol Overall Penalty (tautomerization included): -0.00 kcal/mol Total Charge: -1 --------------------------- Processing Input Structure #5 Title: TEMP00000005 Calculated pKas Conjugate Atom Acid/Base pKa . . . . . . . . . . . . . . . . . . . . . . . Variation: 1 24 Conj_Base 4.97 pKa penalty: 0.01 kcal/mol Charging penalty: 0.01 kcal/mol Neutralization penalty: 0.00 kcal/mol Overall Penalty (tautomerization included): -0.00 kcal/mol Total Charge: -1 --------------------------- Processing Input Structure #6 Title: TEMP00000006 Calculated pKas Conjugate Atom Acid/Base pKa . . . . . . . . . . . . . . . . . . . . . . . Variation: 1 24 Conj_Base 4.97 pKa penalty: 0.01 kcal/mol Charging penalty: 0.01 kcal/mol Neutralization penalty: 0.00 kcal/mol Overall Penalty (tautomerization included): -0.00 kcal/mol Total Charge: -1 --------------------------- Processing Input Structure #7 Title: TEMP00000007 Calculated pKas Conjugate Atom Acid/Base pKa . . . . . . . . . . . . . . . . . . . . . . . Variation: 1 24 Conj_Base 4.97 pKa penalty: 0.01 kcal/mol Charging penalty: 0.01 kcal/mol Neutralization penalty: 0.00 kcal/mol Overall Penalty (tautomerization included): -0.00 kcal/mol Total Charge: -1 --------------------------- Processing Input Structure #8 Title: TEMP00000008 Calculated pKas Conjugate Atom Acid/Base pKa . . . . . . . . . . . . . . . . . . . . . . . Variation: 1 24 Conj_Base 4.97 pKa penalty: 0.01 kcal/mol Charging penalty: 0.01 kcal/mol Neutralization penalty: 0.00 kcal/mol Overall Penalty (tautomerization included): -0.00 kcal/mol Total Charge: -1 --------------------------- Processing Input Structure #9 Title: TEMP00000009 Calculated pKas Conjugate Atom Acid/Base pKa . . . . . . . . . . . . . . . . . . . . . . . Variation: 1 24 Conj_Base 4.97 pKa penalty: 0.01 kcal/mol Charging penalty: 0.01 kcal/mol Neutralization penalty: 0.00 kcal/mol Overall Penalty (tautomerization included): -0.00 kcal/mol Total Charge: -1 --------------------------- Processing Input Structure #10 Title: TEMP00000010 Calculated pKas Conjugate Atom Acid/Base pKa . . . . . . . . . . . . . . . . . . . . . . . Variation: 1 24 Conj_Base 4.97 pKa penalty: 0.01 kcal/mol Charging penalty: 0.01 kcal/mol Neutralization penalty: 0.00 kcal/mol Overall Penalty (tautomerization included): -0.00 kcal/mol Total Charge: -1 --------------------------- Processing Input Structure #11 Title: TEMP00000011 Calculated pKas Conjugate Atom Acid/Base pKa . . . . . . . . . . . . . . . . . . . . . . . Variation: 1 24 Conj_Base 4.97 pKa penalty: 0.01 kcal/mol Charging penalty: 0.01 kcal/mol Neutralization penalty: 0.00 kcal/mol Overall Penalty (tautomerization included): -0.00 kcal/mol Total Charge: -1 --------------------------- Processing Input Structure #12 Title: TEMP00000012 Calculated pKas Conjugate Atom Acid/Base pKa . . . . . . . . . . . . . . . . . . . . . . . Variation: 1 24 Conj_Base 4.97 pKa penalty: 0.01 kcal/mol Charging penalty: 0.01 kcal/mol Neutralization penalty: 0.00 kcal/mol Overall Penalty (tautomerization included): -0.00 kcal/mol Total Charge: -1 --------------------------- Processing Input Structure #13 Title: TEMP00000013 Calculated pKas Conjugate Atom Acid/Base pKa . . . . . . . . . . . . . . . . . . . . . . . Variation: 1 24 Conj_Base 4.97 pKa penalty: 0.01 kcal/mol Charging penalty: 0.01 kcal/mol Neutralization penalty: 0.00 kcal/mol Overall Penalty (tautomerization included): -0.00 kcal/mol Total Charge: -1 --------------------------- Processing Input Structure #14 Title: TEMP00000014 Calculated pKas Conjugate Atom Acid/Base pKa . . . . . . . . . . . . . . . . . . . . . . . Variation: 1 24 Conj_Base 4.97 pKa penalty: 0.01 kcal/mol Charging penalty: 0.01 kcal/mol Neutralization penalty: 0.00 kcal/mol Overall Penalty (tautomerization included): -0.00 kcal/mol Total Charge: -1 --------------------------- Processing Input Structure #15 Title: TEMP00000015 Calculated pKas Conjugate Atom Acid/Base pKa . . . . . . . . . . . . . . . . . . . . . . . Variation: 1 24 Conj_Base 4.97 pKa penalty: 0.01 kcal/mol Charging penalty: 0.01 kcal/mol Neutralization penalty: 0.00 kcal/mol Overall Penalty (tautomerization included): -0.00 kcal/mol Total Charge: -1 --------------------------- Processing Input Structure #16 Title: TEMP00000016 Calculated pKas Conjugate Atom Acid/Base pKa . . . . . . . . . . . . . . . . . . . . . . . Variation: 1 24 Conj_Base 4.97 pKa penalty: 0.01 kcal/mol Charging penalty: 0.01 kcal/mol Neutralization penalty: 0.00 kcal/mol Overall Penalty (tautomerization included): -0.00 kcal/mol Total Charge: -1 ---------------------------