usefragsph not on There are 28 ligand heavy atoms Ligand center of coords (x y z): 50.6441428571429 35.8796428571428 24.8977142857143 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1956 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 705 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 705 Number of spheres polar: 179, nonpolar: 502, out of current total: 705 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 40.65326 60.59447 25.89228 45.81104 15.19151 34.78993 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 198 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 152 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 95 Spheres center of coords (x y z): 50.2918003157895 36.2577450526316 25.0166547368421 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 2.67097527573063 Final number of output spheres is: 45 Number of polar spheres: 7 Number of nonpolar spheres: 37 Number of spheres that are near neither polar nor nonpolar receptor atoms: 1 Final number of spheres that are from crystallographic ligand: 28