usefragsph not on
There are 28 ligand heavy atoms
Ligand center of coords (x y z): -3.22003571428571 -18.4350357142857 31.5891071428571
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 1849
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 610
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 610
Number of spheres polar: 160, nonpolar: 414, out of current total: 610
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -13.17685 6.77854 -28.42067 -8.46584 21.79737 41.57657
Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 306
Number of spheres after second pass removing spheres absolutely <0.5 from each other: 264
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 156
Spheres center of coords (x y z): -3.53000724358974 -18.0746825 31.0042921153846
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 2.60386189278903
Final number of output spheres is: 60
Number of polar spheres: 13
Number of nonpolar spheres: 46
Number of spheres that are near neither polar nor nonpolar receptor atoms: 1
Final number of spheres that are from crystallographic ligand: 28