usefragsph not on There are 27 ligand heavy atoms Ligand center of coords (x y z): 60.3257407407407 45.8092592592593 30.5323333333333 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1795 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 601 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 601 Number of spheres polar: 173, nonpolar: 388, out of current total: 601 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 50.46185 70.31829 35.82148 55.79355 20.54919 40.42051 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 301 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 251 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 154 Spheres center of coords (x y z): 60.2352432467532 46.0863814935065 30.063359025974 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 2.54091983198845 Final number of output spheres is: 60 Number of polar spheres: 11 Number of nonpolar spheres: 49 Number of spheres that are near neither polar nor nonpolar receptor atoms: 0 Final number of spheres that are from crystallographic ligand: 27