usefragsph not on There are 27 ligand heavy atoms Ligand center of coords (x y z): 14.5562592592593 49.2716666666667 21.9482222222222 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 2136 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 1227 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 1227 Number of spheres polar: 343, nonpolar: 759, out of current total: 1227 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 4.58789 24.52908 39.35477 59.25881 11.95425 31.44915 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 612 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 522 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 492 Spheres center of coords (x y z): 15.6393583739837 49.7837475000001 19.6241469105691 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.61941481867503 Final number of output spheres is: 60 Number of polar spheres: 23 Number of nonpolar spheres: 32 Number of spheres that are near neither polar nor nonpolar receptor atoms: 5 Final number of spheres that are from crystallographic ligand: 27