usefragsph not on There are 33 ligand heavy atoms Ligand center of coords (x y z): 61.0241515151515 42.2907575757576 22.5133939393939 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1919 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 636 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 636 Number of spheres polar: 190, nonpolar: 401, out of current total: 636 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 51.02841 70.96019 32.38597 52.25587 12.51752 32.48085 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 183 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 148 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 111 Spheres center of coords (x y z): 59.1529316216216 41.8580732432433 23.5929828828829 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 3.23807108088441 Final number of output spheres is: 45 Number of polar spheres: 9 Number of nonpolar spheres: 33 Number of spheres that are near neither polar nor nonpolar receptor atoms: 3 Final number of spheres that are from crystallographic ligand: 33