usefragsph not on There are 44 ligand heavy atoms Ligand center of coords (x y z): 58.7930909090909 41.2719090909091 23.5732727272727 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 2612 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 747 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 747 Number of spheres polar: 244, nonpolar: 454, out of current total: 747 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 48.79376 67.98037 31.32439 51.19311 14.08614 33.55821 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 338 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 290 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 261 Spheres center of coords (x y z): 56.8710247126437 40.7602364750958 25.5508359770115 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 4.19207442122302 Final number of output spheres is: 60 Number of polar spheres: 12 Number of nonpolar spheres: 42 Number of spheres that are near neither polar nor nonpolar receptor atoms: 6 Final number of spheres that are from crystallographic ligand: 44