usefragsph not on There are 26 ligand heavy atoms Ligand center of coords (x y z): 62.3863461538462 9.59330769230769 36.5713076923077 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 2057 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 911 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 911 Number of spheres polar: 214, nonpolar: 646, out of current total: 911 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 52.41605 72.31991 -0.39712 19.51631 26.58610 46.56627 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 229 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 191 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 102 Spheres center of coords (x y z): 64.2137371568627 10.1622904901961 36.7236195098039 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 3.35277727544048 Final number of output spheres is: 45 Number of polar spheres: 8 Number of nonpolar spheres: 34 Number of spheres that are near neither polar nor nonpolar receptor atoms: 3 Final number of spheres that are from crystallographic ligand: 26