usefragsph not on There are 22 ligand heavy atoms Ligand center of coords (x y z): 15.3930454545455 13.9646818181818 18.0790454545455 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1606 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 706 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 706 Number of spheres polar: 175, nonpolar: 478, out of current total: 706 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 5.51290 25.38900 3.97700 23.95398 8.27796 28.04539 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 233 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 193 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 90 Spheres center of coords (x y z): 13.44757 14.2537012222222 17.2271968888889 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 3.14538639362004 Final number of output spheres is: 45 Number of polar spheres: 5 Number of nonpolar spheres: 36 Number of spheres that are near neither polar nor nonpolar receptor atoms: 4 Final number of spheres that are from crystallographic ligand: 22