usefragsph not on
There are 22 ligand heavy atoms
Ligand center of coords (x y z): 41.6546363636364 24.9535 78.9746363636364
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 1410
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 682
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 682
Number of spheres polar: 229, nonpolar: 421, out of current total: 682
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 31.65797 51.64738 14.95915 34.92984 68.97549 88.89856
Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 185
Number of spheres after second pass removing spheres absolutely <0.8 from each other: 146
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 82
Spheres center of coords (x y z): 41.3994876829268 24.8736130487805 79.3629841463415
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 2.23086885687598
Final number of output spheres is: 45
Number of polar spheres: 5
Number of nonpolar spheres: 38
Number of spheres that are near neither polar nor nonpolar receptor atoms: 2
Final number of spheres that are from crystallographic ligand: 22