usefragsph not on
There are 22 ligand heavy atoms
Ligand center of coords (x y z): 41.6546363636364 24.9535 78.9746363636364
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 1410
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 682
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 682
Number of spheres polar: 229, nonpolar: 421, out of current total: 682
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 31.65797 51.64738 14.95915 34.92984 68.97549 88.89856
Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 333
Number of spheres after second pass removing spheres absolutely <0.5 from each other: 260
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 145
Spheres center of coords (x y z): 41.4359215172413 24.9941888965517 79.5381263448276
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 2.21329737105854
Final number of output spheres is: 60
Number of polar spheres: 6
Number of nonpolar spheres: 53
Number of spheres that are near neither polar nor nonpolar receptor atoms: 1
Final number of spheres that are from crystallographic ligand: 22