usefragsph not on
There are 29 ligand heavy atoms
Ligand center of coords (x y z): 48.4743793103448 63.4560689655172 -6.45303448275862
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 2271
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 913
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 913
Number of spheres polar: 127, nonpolar: 693, out of current total: 913
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 38.47665 58.46420 53.58651 73.35630 -16.39071 3.53936
Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 471
Number of spheres after second pass removing spheres absolutely <0.5 from each other: 408
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 375
Spheres center of coords (x y z): 52.2630336 63.6104178933333 -5.36625829333333
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 5.59358844427717
Final number of output spheres is: 60
Number of polar spheres: 10
Number of nonpolar spheres: 49
Number of spheres that are near neither polar nor nonpolar receptor atoms: 1
Final number of spheres that are from crystallographic ligand: 29