DOCK version 3.5.54, compiled on 20120216 CPU, Date, and Time: node-6-11.c.bkslab.org 13-Mar-12 14:16:54 Solvation type: context-dependent ligand desolvation Internal Distance Clashes will be checked Receptor spheres: ../../sph/match2.sph Receptor cluster number(s): 1 Desolvation grid: ../../grids/solvmap_sev :dislim = 1.5000 maxnodes = 4 ratiom = 0.0000 minnodes = 3 :lbinsz = 0.4000 lovlap = 0.1000 sbinsz = 0.4000 sovlap = 0.1000 Input ligand: /raid3/people/mysinger/pxc/dude/original/dud_lig_rxr_0001.db.gz DelPhi grid: ../../grids/rec+sph.phi vdW parms: ../../grids/vdw.parms.amb.mindock chemgrid prefix: ../../grids/chem resolution = 0.3300000 number of points = 1703680 a maximum of 1 bad contacts will be allowed for each orientation random seed = 777 natmin = 5 natmax = 100 nsav = 50000 300000 molecules may be searched in this run hydrogens always written out zooming will not be done trilinear interpolation is always done Orientation minimization: best conformation Simplex parameters: Max energy to minimize: 0.100E+16 Max step-size for translation (A): 0.20 Max step-size for euler angles: 5.00 Min energy change for restart (kcal/mol): 1.00 Energy convergence tolerance (kcal/mol): 0.10 Max number of iterations: 200 database version: 5.2 7 colors used in ligand database file 12 colors used in receptor sphere file ligand color positive 1 merged number = 1 ligand color negative 2 merged number = 2 ligand color acceptor 3 merged number = 3 ligand color donor 4 merged number = 4 ligand color ester_o 5 merged number = 5 ligand color amide_o 6 merged number = 6 ligand color neutral 7 merged number = 7 receptor color positive 1 merged number = 1 receptor color negative 2 merged number = 2 receptor color acceptor 3 merged number = 3 receptor color donor 4 merged number = 4 receptor color ester_o 5 merged number = 5 receptor color amide_o 6 merged number = 6 receptor color neutral 7 merged number = 7 receptor color not_neutral 8 merged number = 8 receptor color positive_or_donor 9 merged number = 9 receptor color negative_or_acceptor 10 merged number = 10 receptor color neutral_or_acceptor_or_donor 11 merged number = 11 receptor color donacc 12 merged number = 12 12 colors in merged ligand-sphere color table this is a run with labeled color matching: match positive negative match positive negative_or_acceptor match positive not_neutral match negative positive match negative positive_or_donor match negative not_neutral match donor acceptor match donor donacc match donor negative_or_acceptor match donor neutral_or_acceptor_or_donor match donor not_neutral match acceptor donor match acceptor donacc match acceptor positive_or_donor match acceptor neutral_or_acceptor_or_donor match acceptor not_neutral match neutral neutral match neutral neutral_or_acceptor_or_donor match ester_o donor match ester_o donacc match ester_o positive_or_donor match ester_o not_neutral match amide_o donor match amide_o donacc match amide_o positive_or_donor match amide_o not_neutral 26 chemical matches specified grid min 38.18500 28.80100 12.39700 grid max 79.68500 64.30100 51.39700 using cluster number: 1 output file: test.eel1.gz Receptor spheres: 45 0 0 0 0 0 43 non-zero colors in receptor sphere cluster cluster 1 with 45 spheres 9001 9002 9003 9004 9005 9006 9007 9008 9009 9010 9011 9012 9013 9014 9015 9016 9017 9018 9019 9020 9021 9022 9023 9024 9025 9026 9027 9028 9029 9030 9031 9032 9033 9034 9035 9036 9037 9038 9039 9040 9041 9042 9043 9044 9045 maximum receptor sphere-sphere distance 12.44537 mol# id_num matched nscored nhvy nconfs part.fcn Time E id_num nbr elect + vdW + polsol + apolsol = Total 1 C03834061 11257 83202 27 15 160.5 0.31 E C03834061 2 -35.19 -31.89 31.69 -5.49 -40.88 2 C03834061 1669 23758 27 15 3.0 0.06 E C03834061 2 -30.42 -35.83 31.25 -5.51 -40.50 3 C03834061 11343 71664 27 15 97.4 0.28 E C03834061 2 -37.45 -29.31 31.74 -5.60 -40.62 4 C03834061 1669 13212 27 15 0.0 0.04 E C03834061 2 -30.16 -31.70 30.81 -5.66 -36.72 5 C01539579 11289 62000 26 4 155.3 0.32 E C01539579 2 -35.77 -30.69 31.68 -7.61 -42.39 6 C01539579 1892 17190 26 4 4.4 0.06 E C01539579 2 -35.10 -30.66 31.41 -7.60 -41.94 7 C01539579 11334 57216 26 4 130.8 0.31 E C01539579 2 -40.61 -25.57 32.09 -7.65 -41.74 8 C01539579 1892 10894 26 4 2.0 0.04 E C01539579 2 -38.95 -26.52 32.01 -7.65 -41.10 9 C03834073 11255 35304 30 34 10.0 0.16 E C03834073 2 -28.41 57.86 46.74 -6.23 69.97 10 C03834073 1669 24847 30 75 0.2 0.06 E C03834073 2 -23.42 201.98 42.77 -6.38 214.95 11 C03834073 11337 30573 30 34 0.0 0.15 E C03834073 2 -30.07 24.01 46.92 -6.30 34.56 12 C03834073 1669 20029 30 75 2.0 0.05 E C03834073 2 -20.80 186.74 44.52 -6.45 204.02 13 C03834062 1669 6315 30 76 0.0 0.04 E C03834062 2 -6.87 250.67 31.15 -8.72 266.23 14 C03834062 11254 34635 30 42 2.0 0.17 E C03834062 2 -30.30 59.14 29.45 -8.42 49.87 15 C03834062 1668 4317 30 79 0.04 bump 16 C03834062 11341 34161 30 44 0.0 0.16 E C03834062 2 -42.50 52.79 31.42 -8.36 33.35 17 C03834071 1669 8134 31 164 0.0 0.04 E C03834071 2 -28.94 82.93 29.98 -8.73 75.25 18 C03834071 11249 20410 31 85 0.0 0.13 E C03834071 2 -7.06 191.66 29.26 -9.07 204.79 19 C03834071 1669 6385 31 159 0.0 0.04 E C03834071 2 -29.15 96.66 30.44 -8.75 89.19 20 C03834071 11336 19080 31 81 0.13 bump 21 C03834076 13213 145730 26 18 252.7 0.47 E C03834076 2 -40.18 -31.67 31.40 -5.24 -45.69 22 C03834076 1668 29477 26 18 22.3 0.06 E C03834076 2 -43.51 -27.48 31.28 -5.49 -45.19 23 C03834076 13362 140515 26 18 285.2 0.47 E C03834076 2 -45.13 -29.28 31.85 -5.36 -47.92 24 C03834076 1668 14724 26 18 8.0 0.05 E C03834076 2 -43.14 -30.17 31.67 -5.36 -47.00 25 C03834064 11260 28474 28 5 63.4 0.20 E C03834064 2 -31.57 -25.08 30.90 -7.04 -32.79 26 C03834064 1669 13126 28 5 0.0 0.05 E C03834064 2 -34.64 -20.52 31.18 -7.01 -31.00 27 C03834064 11344 22889 28 5 22.5 0.19 E C03834064 2 -30.36 -18.43 30.43 -7.06 -25.43 28 C03834064 1668 6243 28 5 0.0 0.03 E C03834064 2 -31.11 -18.13 30.51 -7.07 -25.80 29 C03834067 11275 22044 31 54 0.0 0.13 E C03834067 2 -28.78 223.84 29.33 -8.71 215.68 30 C03834067 0 0 31 44 0.00 no_match 31 C03834067 1669 16124 31 130 0.0 0.05 E C03834067 2 -6.47 263.77 30.37 -9.37 278.30 32 C03834067 11339 39073 31 50 14.0 0.18 E C03834067 2 -24.15 80.05 29.62 -8.93 76.58 33 C03834067 0 0 31 43 0.00 no_match 34 C03834067 1669 13834 31 114 0.04 bump 35 C03834066 11448 82348 27 15 180.0 0.28 E C03834066 2 -35.25 -33.45 31.66 -5.61 -42.64 36 C03834066 1669 20353 27 15 6.8 0.06 E C03834066 2 -30.62 -36.42 31.52 -5.67 -41.20 37 C03834066 11542 65450 27 15 135.8 0.24 E C03834066 2 -38.55 -29.82 31.76 -5.74 -42.34 38 C03834066 1668 10516 27 15 0.1 0.05 E C03834066 2 -29.65 -33.51 30.95 -5.79 -38.00 39 C03834065 11252 30812 30 29 2.0 0.15 E C03834065 2 -24.12 55.06 33.84 -7.63 57.15 40 C03834065 1669 15409 30 80 2.0 0.04 E C03834065 2 -23.25 51.53 32.95 -7.42 53.81 41 C03834065 11339 34749 30 29 4.0 0.17 E C03834065 2 -20.62 87.62 31.30 -7.69 90.61 42 C03834065 1668 9965 30 80 0.0 0.03 E C03834065 2 -26.91 74.06 33.14 -7.51 72.79 43 C04147417 12373 22362 27 10 12.6 0.15 E C04147417 2 -39.61 -28.40 36.34 -6.63 -38.31 44 C04147417 12486 19358 27 10 28.0 0.15 E C04147417 2 -42.62 -23.95 35.92 -6.67 -37.32 45 C03834074 11271 26791 31 43 0.0 0.14 E C03834074 2 -43.61 92.10 71.32 -8.19 111.62 46 C03834074 1669 20941 31 84 2.0 0.05 E C03834074 2 -31.19 49.70 67.01 -7.93 77.59 47 C03834074 11337 32583 31 43 8.0 0.15 E C03834074 2 -32.23 61.47 73.36 -8.24 94.36 48 C03834074 1668 14321 31 84 0.0 0.04 E C03834074 2 -31.20 98.83 67.76 -7.90 127.48 49 C03834070 11640 103547 26 7 277.9 0.46 E C03834070 2 -40.45 -32.08 30.84 -6.94 -48.63 50 C03834070 1667 26371 26 7 6.0 0.07 E C03834070 2 -41.48 -29.66 30.89 -6.88 -47.13 51 C03834070 11347 79629 26 7 160.3 0.39 E C03834070 2 -40.59 -24.59 30.01 -6.98 -42.15 52 C03834070 1669 19750 26 7 18.0 0.05 E C03834070 2 -40.49 -19.77 30.59 -6.88 -36.55 53 C03834068 1669 6791 29 10 0.0 0.04 E C03834068 2 -26.56 106.86 28.98 -7.80 101.48 54 C03834068 11249 83345 29 12 54.0 0.27 E C03834068 2 -31.08 -16.58 28.85 -7.69 -26.49 55 C03834068 1669 5643 29 10 0.0 0.03 E C03834068 2 -31.73 74.69 29.65 -7.80 64.81 56 C03834068 11343 76776 29 12 72.2 0.27 E C03834068 2 -34.28 -17.85 28.85 -7.68 -30.95 57 C04632537 1669 26183 26 12 26.0 0.07 E C04632537 2 -41.44 -31.92 30.97 -6.24 -48.63 58 C04632537 11266 118955 26 12 143.3 0.39 E C04632537 2 -41.21 -32.02 30.93 -6.23 -48.52 59 C04632537 1669 11557 26 10 14.0 0.05 E C04632537 2 -40.75 -24.48 30.16 -6.34 -41.42 60 C04632537 11338 101062 26 10 165.4 0.34 E C04632537 2 -41.20 -24.82 30.21 -6.28 -42.09 61 C04147419 8759 99657 29 560 38.1 0.21 E C04147419 3 -41.88 -32.54 36.10 -7.54 -45.86 62 C04147419 8531 74721 29 486 24.0 0.19 E C04147419 3 -45.03 -13.17 35.82 -7.61 -29.99 63 C03834069 11218 93924 25 5 270.0 0.43 E C03834069 2 -27.06 -15.62 30.39 -7.22 -19.51 64 C03834069 1600 14796 25 5 2.0 0.05 E C03834069 2 -22.92 15.38 30.65 -7.24 15.88 65 C03834069 11257 101289 25 5 266.1 0.46 E C03834069 2 -29.13 -29.06 32.48 -7.36 -33.06 66 C03834069 1600 18904 25 5 10.0 0.05 E C03834069 2 -29.87 -28.28 32.48 -7.34 -33.01 67 C04632538 11253 7122 31 5 8.0 0.13 E C04632538 2 -29.76 73.41 29.92 -8.56 65.00 68 C04632538 1669 2770 31 5 0.0 0.03 E C04632538 2 -32.62 60.97 30.19 -8.57 49.97 69 C04632538 11339 6511 31 5 4.0 0.14 E C04632538 2 -33.27 118.86 29.72 -8.82 106.50 70 C04632538 1669 1441 31 5 0.02 bump 71 C04147418 8758 35410 28 84 22.0 0.14 E C04147418 3 -42.65 -21.89 35.81 -7.22 -35.95 72 C04147418 8526 36407 28 84 8.0 0.14 E C04147418 3 -45.38 -0.94 36.01 -7.03 -17.34 73 C04632539 13204 64539 27 6 110.4 0.36 E C04632539 2 -41.28 -24.40 31.22 -6.72 -41.18 74 C04632539 1669 11696 27 6 8.0 0.05 E C04632539 2 -41.56 -17.69 31.30 -6.69 -34.63 75 C04632539 13354 68558 27 6 176.5 0.39 E C04632539 2 -40.46 -23.69 30.37 -6.75 -40.52 76 C04632539 1669 13233 27 6 12.0 0.05 E C04632539 2 -41.47 -17.15 31.45 -6.67 -33.83 EOF: /raid3/people/mysinger/pxc/dude/original/dud_lig_rxr_0001.db.gz end of file encountered total minimization steps = 439463 for debugging, time = 12.63000 solvation corrected scores: (a) 1 C04632537 score: -48.634 nathvy = 26 nconfs = 12 2 C03834070 score: -48.631 nathvy = 26 nconfs = 7 3 C04632537 score: -48.521 nathvy = 26 nconfs = 12 4 C03834076 score: -47.920 nathvy = 26 nconfs = 18 5 C03834070 score: -47.130 nathvy = 26 nconfs = 7 6 C03834076 score: -47.004 nathvy = 26 nconfs = 18 7 C04147419 score: -45.863 nathvy = 29 nconfs = 560 8 C03834076 score: -45.685 nathvy = 26 nconfs = 18 9 C03834076 score: -45.188 nathvy = 26 nconfs = 18 10 C03834066 score: -42.641 nathvy = 27 nconfs = 15 11 C01539579 score: -42.391 nathvy = 26 nconfs = 4 12 C03834066 score: -42.342 nathvy = 27 nconfs = 15 13 C03834070 score: -42.146 nathvy = 26 nconfs = 7 14 C04632537 score: -42.088 nathvy = 26 nconfs = 10 15 C01539579 score: -41.945 nathvy = 26 nconfs = 4 16 C01539579 score: -41.737 nathvy = 26 nconfs = 4 17 C04632537 score: -41.416 nathvy = 26 nconfs = 10 18 C03834066 score: -41.197 nathvy = 27 nconfs = 15 19 C04632539 score: -41.181 nathvy = 27 nconfs = 6 20 C01539579 score: -41.105 nathvy = 26 nconfs = 4 21 C03834061 score: -40.875 nathvy = 27 nconfs = 15 22 C03834061 score: -40.617 nathvy = 27 nconfs = 15 23 C04632539 score: -40.523 nathvy = 27 nconfs = 6 24 C03834061 score: -40.503 nathvy = 27 nconfs = 15 25 C04147417 score: -38.308 nathvy = 27 nconfs = 10 26 C03834066 score: -37.996 nathvy = 27 nconfs = 15 27 C04147417 score: -37.316 nathvy = 27 nconfs = 10 28 C03834061 score: -36.720 nathvy = 27 nconfs = 15 29 C03834070 score: -36.553 nathvy = 26 nconfs = 7 30 C04147418 score: -35.948 nathvy = 28 nconfs = 84 31 C04632539 score: -34.634 nathvy = 27 nconfs = 6 32 C04632539 score: -33.832 nathvy = 27 nconfs = 6 33 C03834069 score: -33.064 nathvy = 25 nconfs = 5 34 C03834069 score: -33.015 nathvy = 25 nconfs = 5 35 C03834064 score: -32.791 nathvy = 28 nconfs = 5 36 C03834064 score: -31.001 nathvy = 28 nconfs = 5 37 C03834068 score: -30.951 nathvy = 29 nconfs = 12 38 C04147419 score: -29.992 nathvy = 29 nconfs = 486 39 C03834068 score: -26.492 nathvy = 29 nconfs = 12 40 C03834064 score: -25.804 nathvy = 28 nconfs = 5 41 C03834064 score: -25.427 nathvy = 28 nconfs = 5 42 C03834069 score: -19.507 nathvy = 25 nconfs = 5 43 C04147418 score: -17.340 nathvy = 28 nconfs = 84 44 C03834069 score: 15.878 nathvy = 25 nconfs = 5 45 C03834062 score: 33.345 nathvy = 30 nconfs = 44 46 C03834073 score: 34.555 nathvy = 30 nconfs = 34 47 C03834062 score: 49.869 nathvy = 30 nconfs = 42 48 C04632538 score: 49.970 nathvy = 31 nconfs = 5 49 C03834065 score: 53.809 nathvy = 30 nconfs = 80 50 C03834065 score: 57.154 nathvy = 30 nconfs = 29 51 C03834068 score: 64.806 nathvy = 29 nconfs = 10 52 C04632538 score: 65.004 nathvy = 31 nconfs = 5 53 C03834073 score: 69.965 nathvy = 30 nconfs = 34 54 C03834065 score: 72.785 nathvy = 30 nconfs = 80 55 C03834071 score: 75.250 nathvy = 31 nconfs = 164 56 C03834067 score: 76.584 nathvy = 31 nconfs = 50 57 C03834074 score: 77.586 nathvy = 31 nconfs = 84 58 C03834071 score: 89.193 nathvy = 31 nconfs = 159 59 C03834065 score: 90.607 nathvy = 30 nconfs = 29 60 C03834074 score: 94.362 nathvy = 31 nconfs = 43 61 C03834068 score: 101.484 nathvy = 29 nconfs = 10 62 C04632538 score: 106.495 nathvy = 31 nconfs = 5 63 C03834074 score: 111.624 nathvy = 31 nconfs = 43 64 C03834074 score: 127.477 nathvy = 31 nconfs = 84 65 C03834073 score: 204.016 nathvy = 30 nconfs = 75 66 C03834071 score: 204.790 nathvy = 31 nconfs = 85 67 C03834073 score: 214.953 nathvy = 30 nconfs = 75 68 C03834067 score: 215.678 nathvy = 31 nconfs = 54 69 C03834062 score: 266.235 nathvy = 30 nconfs = 76 70 C03834067 score: 278.298 nathvy = 31 nconfs = 130 Date and Time: 13-Mar-12 14:17:14 elapsed time (sec): 12.7000