Distance from surface specified: 1.80 There are 24 ligand heavy atoms Ligand center of coords (x y z): 61.0525833333333 45.9647083333333 31.0246666666667 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 19032 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (14 angstroms): 14722 WARNING: removing a crystallographic sphere that is distance 1.99325412328684 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 1.84481408277365 angstroms from closest receptor atom Number of spheres after removing too far (>7 angstroms) and too close to receptor (<2 angstroms): 14265 Number of spheres polar: 6956, nonpolar: 6371, out of current total: 14265 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 47.05380 75.04960 31.96680 59.95320 17.03760 45.02100 Number of spheres after removing spheres too close to each other (approximately <1.4 angstroms): 1983 Number of spheres after second pass removing spheres absolutely <0.9 from each other: 938 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 902 Spheres center of coords (x y z): 64.0689059866962 43.5077800443458 31.1172687361419 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 13.7540255248856 Final number of output spheres is: 200 Number of polar spheres: 113 Number of nonpolar spheres: 85 Number of spheres that are near neither polar nor nonpolar receptor atoms: 2 Final number of spheres that are from crystallographic ligand: 22