usefragsph not on There are 44 ligand heavy atoms Ligand center of coords (x y z): 14.0337727272727 -9.70513636363636 19.2542727272727 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 2217 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 912 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 912 Number of spheres polar: 222, nonpolar: 466, out of current total: 912 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 4.10955 23.94859 -19.61584 0.15100 9.36111 29.25284 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 323 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 277 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 264 Spheres center of coords (x y z): 15.9293829545454 -10.979179469697 22.7591978409091 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.37148696275019 Final number of output spheres is: 45 Number of polar spheres: 12 Number of nonpolar spheres: 27 Number of spheres that are near neither polar nor nonpolar receptor atoms: 6 Final number of spheres that are from crystallographic ligand: 44